BALLView – Molecular modeling and visualisation.Avogadro – Plugin-extensible molecule visualisation.NWChem – Quantum chemical and molecular dynamics software.NAMD – Parallel efficient simulation of large systems involving millions of atoms.MDynaMix – General-purpose molecular dynamics, simulating mixtures of molecules.GROMACS – Protein, lipid, and nucleic acid simulation.3DSlicer – Medical image analysis and visualisation.VTK – C++ toolkit for 3D computer graphics, image processing, and visualisation.KNIME – Data analytics, reporting, and integration platform.
ITK – Development framework used for creation of image segmentation and registration programs.IMOD – 2D and 3D analysis of electron microscopy data.ImageJ – Image processing application developed at the National Institutes of Health.Ilastik – Image-classification and segmentation software.FIJI (software) – ImageJ-based image processing.Endrov – Java-based plugin architecture designed to analyse complex spatio-temporal image data.CellProfiler – Automatic microscopic analysis, aimed at individuals lacking training in computer vision.P-GRADE Portal – Grid portal software enabling the creation, execution and monitoring of workflows through high-level Web interfaces.RawTherapee – Digital image workflow management aimed at RAW photo processing.LightZone - Free, open-source digital photo editor software application.Krita – Digital painting and sketching application, with a variety of brush engines.Karbon – Scalable vector drawing application in KDE.GIMP – Raster graphics editor aimed at image retouching/editing.digiKam – Integrated photography toolkit including editing capabilities.Darktable – Digital image workflow management, including RAW photo processing.refbase – Web-based institutional repository and reference management software.Evergreen – Integrated Library System initially developed for the Georgia Public Library Service's PINES catalog.
It can also create animated and interactive PDF presentations and forms. Scribus - Designed for layout, typesetting, and preparation of files for professional-quality image-setting equipment.SimPy – Queue-theoretic event-based simulator written in Python.